Annotated reference genomes of plants, animals and fungi
Every eukaryote (animal, plant, fungus and protist) with an annotated NCBI RefSeq reference genome, with genome size, chromosome count, GC content and number of genes. One row per species' reference genome assembly.
Columns
Stable keys — use them in the API, SQL and code
| Key | Name | Type | Description |
|---|---|---|---|
| organism | Species | string | Scientific name of the organism. |
| common_name | Common name | string | Common name from NCBI Taxonomy, where there is one. |
| tax_id | NCBI taxon ID | integer | — |
| group | Group | string | NCBI's informal group name, e.g. birds, eudicots, budding yeasts & allies. |
| kingdom | Kingdom | string | Kingdom in NCBI Taxonomy (Metazoa = animals, Viridiplantae = green plants). |
| phylum | Phylum | string | — |
| class | Class | string | — |
| order | Order | string | — |
| family | Family | string | — |
| genome_size_mb | Genome size | number · Mb | Total length of the assembled genome sequence, in millions of DNA base pairs. |
| chromosomes | Chromosomes | integer | Number of assembled chromosomes in the assembly. |
| gc_percent | GC content | number · % | Share of the DNA made of G and C bases. |
| genes_total | Genes | integer | Total annotated genes (protein-coding, non-coding and pseudogenes). |
| protein_coding_genes | Protein-coding genes | integer | — |
| assembly_level | Assembly level | string | How complete the assembly is: Complete Genome, Chromosome, Scaffold or Contig. |
| contig_n50 | Contig N50 | integer | Half the assembly is in contigs at least this long (bp); higher = more contiguous. |
| accession | Accession | string | NCBI RefSeq assembly accession. |
| assembly_name | Assembly | string | — |
| release_date | Released | date | Date the assembly was released. |
| url | NCBI page | url | — |
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